J3_9Q2M_031

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2M|1|9|C|1234
9Q2M|1|9|C|1235
9Q2M|1|9|A|1236
9Q2M|1|9|G|1237
*
9Q2M|1|9|C|1651
9Q2M|1|9|C|1652
9Q2M|1|9|A|1653
9Q2M|1|9|G|1654
9Q2M|1|9|U|1655
9Q2M|1|9|A|1656
9Q2M|1|9|A|1657
*
9Q2M|1|9|U|1679
9Q2M|1|9|G|1680
9Q2M|1|9|A|1681
9Q2M|1|9|U|1682
9Q2M|1|9|U|1683
9Q2M|1|9|A|1684
9Q2M|1|9|A|1685
9Q2M|1|9|G|1686

Current chains

Chain 9

18S rRNA

Nearby chains

Chain FF

Small ribosomal subunit protein uS7

Chain QQ

Small ribosomal subunit protein uS9

Chain cc

40S ribosomal protein S28