J3_9Q2M_033
3D structure
- PDB id
- 9Q2M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9Q2M|1|9|G|1272, 9Q2M|1|9|A|1274, 9Q2M|1|9|A|1276
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q2M|1|9|C|1253
9Q2M|1|9|U|1254
9Q2M|1|9|U|1255
9Q2M|1|9|A|1256
9Q2M|1|9|A|1257
9Q2M|1|9|U|1258
9Q2M|1|9|U|1259
9Q2M|1|9|U|1260
*
9Q2M|1|9|G|1271
9Q2M|1|9|G|1272
9Q2M|1|9|G|1273
9Q2M|1|9|A|1274
9Q2M|1|9|A|1275
9Q2M|1|9|A|1276
9Q2M|1|9|C|1277
9Q2M|1|9|C|1278
9Q2M|1|9|U|1279
9Q2M|1|9|C|1280
9Q2M|1|9|A|1281
9Q2M|1|9|C|1282
*
9Q2M|1|9|G|1522
9Q2M|1|9|G|1523
9Q2M|1|9|C|1524
9Q2M|1|9|U|1525
9Q2M|1|9|G|1526
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain PP
- Small ribosomal subunit protein uS19
- Chain PT
- P site Ala-tRNA
- Chain SS
- 40S ribosomal protein S18
- Chain UU
- 40S ribosomal protein S20
- Chain dd
- 40S ribosomal protein S29
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