J3_9Q2M_038
3D structure
- PDB id
- 9Q2M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 9Q2M|1|9|U|1541, 9Q2M|1|9|G|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q2M|1|9|C|1538
9Q2M|1|9|A|1539
9Q2M|1|9|C|1540
9Q2M|1|9|U|1541
9Q2M|1|9|G|1542
*
9Q2M|1|9|C|1603
9Q2M|1|9|G|1604
9Q2M|1|9|U|1605
9Q2M|1|9|G|1606
9Q2M|1|9|A|1607
9Q2M|1|9|U|1608
9Q2M|1|9|G|1609
9Q2M|1|9|G|1610
*
9Q2M|1|9|C|1641
9Q2M|1|9|G|1642
9Q2M|1|9|A|1643
9Q2M|1|9|G|1644
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain ET
- Transfer RNA; tRNA
- Chain FF
- Small ribosomal subunit protein uS7
- Chain SS
- 40S ribosomal protein S18
- Chain TT
- Small ribosomal subunit protein eS19
- Chain ZZ
- 40S ribosomal protein S25
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