J3_9Q2P_027

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9Q2P|1|9|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q2P_027 not in the Motif Atlas

Homologous match to J3_9H3G_029

Geometric discrepancy: 0.1715

The information below is about J3_9H3G_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.3

Basepair signature

cWW-cWW-cSW-F-cWW-F-cWS-tHH-F-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

9Q2P|1|9|A|40
9Q2P|1|9|G|41
9Q2P|1|9|A|42
9Q2P|1|9|U|43
9Q2P|1|9|U|44
9Q2P|1|9|A|45
9Q2P|1|9|A|46
9Q2P|1|9|G|47
*
9Q2P|1|9|C|479
9Q2P|1|9|G|480
9Q2P|1|9|C|481
9Q2P|1|9|G|482
9Q2P|1|9|C|483
9Q2P|1|9|A|484
9Q2P|1|9|A|485
9Q2P|1|9|A|486
9Q2P|1|9|U|487
*
9Q2P|1|9|A|512
9Q2P|1|9|G|513
9Q2P|1|9|U|514

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EF

Elongation factor 1-alpha 1

Chain JJ

40S ribosomal protein S9

Chain XX

40S ribosomal protein S23