J3_9H3G_029

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*(A2M)G(PSU)

Length

20 nucleotides

Bulged bases

9H3G|1|h1|A|47

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3G|1|h1|A|41
9H3G|1|h1|G|42
9H3G|1|h1|A|43
9H3G|1|h1|U|44
9H3G|1|h1|U|45
9H3G|1|h1|A|46
9H3G|1|h1|A|47
9H3G|1|h1|G|48
*
9H3G|1|h1|C|433
9H3G|1|h1|G|434
9H3G|1|h1|C|435
9H3G|1|h1|G|436
9H3G|1|h1|C|437
9H3G|1|h1|A2M|438
9H3G|1|h1|A|439
9H3G|1|h1|A|440
9H3G|1|h1|U|441
*
9H3G|1|h1|A2M|466
9H3G|1|h1|G|467
9H3G|1|h1|PSU|468

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AB

Small ribosomal subunit protein uS4y

Chain Aa

Small ribosomal subunit protein eS8z

Chain Va

Small ribosomal subunit protein uS12y