J3_9Q2T_016

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9Q2T|1|5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2T|1|5|A|2551
9Q2T|1|5|G|2552
9Q2T|1|5|A|2553
9Q2T|1|5|U|2554
9Q2T|1|5|G|2555
*
9Q2T|1|5|C|2572
9Q2T|1|5|A|2573
9Q2T|1|5|G|2574
9Q2T|1|5|U|2575
*
9Q2T|1|5|A|2757
9Q2T|1|5|G|2758
9Q2T|1|5|G|2759
9Q2T|1|5|G|2760
9Q2T|1|5|U|2761
9Q2T|1|5|G|2762
9Q2T|1|5|U|2763
9Q2T|1|5|A|2764
9Q2T|1|5|A|2765
9Q2T|1|5|A|2766
9Q2T|1|5|U|2767

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L27