J3_9Q2T_017

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q2T_017 not in the Motif Atlas

Homologous match to J3_8GLP_032

Geometric discrepancy: 0.2188

The information below is about J3_8GLP_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.4

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

9Q2T|1|5|U|2575
9Q2T|1|5|G|2576
*
9Q2T|1|5|C|2585
9Q2T|1|5|G|2586
9Q2T|1|5|A|2587
9Q2T|1|5|C|2588
9Q2T|1|5|C|2589
*
9Q2T|1|5|G|2756
9Q2T|1|5|A|2757

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L27

Chain g

60S ribosomal protein L34