Motif J3_05348.4 Version J3_05348.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 1-9 | 2-3 | 4-6 | 7-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4WFL_002 | 4WFL | 0.7129 | 0 | A | LSRP RNA | C | 15 | G | 16 | * | U | 34 | G | 35 | U | 36 | A | 37 | C | 38 | * | G | 58 | G | 59 | cWW | cWW | ntSH | cWW |
| 2 | J3_8GLP_032 | 8GLP | 0.1962 | 0 | L5 | LSU rRNA | U | 2575 | G | 2576 | * | C | 2585 | G | 2586 | A | 2587 | C | 2588 | C | 2589 | * | G | 2756 | A | 2757 | cWW | cWW | cWW | |
| 3 | J3_9AXU_017 | 9AXU | 0.1732 | 0 | 2 | LSU rRNA | C | 1666 | A | 1667 | * | U | 1676 | A | 1677 | A | 1678 | A | 1679 | U | 1680 | * | A | 1851 | G | 1852 | cWW | cWW | cWW | |
| 4 | J3_9SUM_016 | 9SUM | 0.0000 | 0 | A | LSU rRNA | C | 1571 | A | 1572 | * | U | 1581 | A | 1582 | A | 1583 | C | 1584 | U | 1585 | * | A | 1753 | G | 1754 | cWW | cWW | cWW | |
| 5 | J3_9PN5_016 | 9PN5 | 0.1415 | 0 | A1 | LSU rRNA | C | 1631 | A | 1632 | * | U | 1641 | A | 1642 | A | 1643 | C | 1644 | U | 1645 | * | A | 1810 | G | 1811 | cWW | cWW | cWW | |
| 6 | J3_8OI5_085 | 8OI5 | 0.1545 | 0 | 1 | LSU rRNA | C | 1627 | A | 1628 | * | U | 1637 | A | 1638 | A | 1639 | C | 1640 | U | 1641 | * | A | 1806 | G | 1807 | cWW | ncWW | cWW | |
| 7 | J3_9H3G_019 | 9H3G | 0.3166 | 0 | A | LSU rRNA | G | 1631 | A | 1632 | * | U | 1641 | U | 1642 | A | 1643 | G | 1644 | G | 1645 | * | C | 1812 | C | 1813 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CA*UAACU*AG | 3 |
| CG*UGUAC*GG | 1 |
| UG*CGACC*GA | 1 |
| CA*UAAAU*AG | 1 |
| GA*UUAGG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AAC* | 3 |
| *GUA* | 1 |
| *GAC* | 1 |
| *AAA* | 1 |
| *UAG* | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cWW-cWW-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.34 | Max 0.76
Coloring options: