J3_9Q2T_031
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UGG*UAAGAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 9Q2T|1|9|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q2T_031 not in the Motif Atlas
- Homologous match to J3_9PN5_031
- Geometric discrepancy: 0.139
- The information below is about J3_9PN5_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.8
- Basepair signature
- cWW-F-cWW-cWW-tHW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9Q2T|1|9|U|682
9Q2T|1|9|G|683
9Q2T|1|9|G|684
*
9Q2T|1|9|U|918
9Q2T|1|9|A|919
9Q2T|1|9|A|920
9Q2T|1|9|G|921
9Q2T|1|9|A|922
9Q2T|1|9|G|923
*
9Q2T|1|9|C|1019
9Q2T|1|9|A|1020
9Q2T|1|9|U|1021
9Q2T|1|9|U|1022
9Q2T|1|9|A|1023
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain HH
- Small ribosomal subunit protein eS7
- Chain LL
- Small ribosomal subunit protein uS17
- Chain NN
- 40S ribosomal protein S13
- Chain WW
- 40S ribosomal protein S15a
- Chain XX
- 40S ribosomal protein S23
- Chain bb
- 40S ribosomal protein S27
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