J3_9Q3Q_005

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9Q3Q|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q3Q_005 not in the Motif Atlas

Homologous match to J3_8B0X_034

Geometric discrepancy: 0.032

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9Q3Q|1|A|G|297
9Q3Q|1|A|G|298
9Q3Q|1|A|A|299
9Q3Q|1|A|A|300
9Q3Q|1|A|G|301
*
9Q3Q|1|A|C|316
9Q3Q|1|A|G|317
9Q3Q|1|A|C|318
9Q3Q|1|A|G|319
9Q3Q|1|A|A|320
9Q3Q|1|A|U|321
9Q3Q|1|A|A|322
9Q3Q|1|A|C|323
9Q3Q|1|A|A|324
9Q3Q|1|A|G|325
*
9Q3Q|1|A|C|337
9Q3Q|1|A|G|338
9Q3Q|1|A|U|339
9Q3Q|1|A|A|340
9Q3Q|1|A|C|341

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain W

50S ribosomal protein L24