J3_9Q3Q_006
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 9Q3Q|1|A|U|686, 9Q3Q|1|A|A|792, 9Q3Q|1|A|A|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3Q_006 not in the Motif Atlas
- Homologous match to J3_8B0X_016
- Geometric discrepancy: 0.0341
- The information below is about J3_8B0X_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.3
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9Q3Q|1|A|U|683
9Q3Q|1|A|G|684
9Q3Q|1|A|A|685
9Q3Q|1|A|U|686
9Q3Q|1|A|C|687
9Q3Q|1|A|U|688
9Q3Q|1|A|A|689
*
9Q3Q|1|A|U|773
9Q3Q|1|A|G|774
9Q3Q|1|A|G|775
*
9Q3Q|1|A|C|791
9Q3Q|1|A|A|792
9Q3Q|1|A|A|793
9Q3Q|1|A|A|794
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL34
- Chain C
- 50S ribosomal protein L2
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