J3_9Q3Q_012
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3Q_012 not in the Motif Atlas
- Homologous match to J3_8B0X_035
- Geometric discrepancy: 0.0411
- The information below is about J3_8B0X_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.3
- Basepair signature
- cWW-tSH-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9Q3Q|1|A|G|1424
9Q3Q|1|A|G|1425
9Q3Q|1|A|G|1426
9Q3Q|1|A|A|1427
9Q3Q|1|A|C|1428
9Q3Q|1|A|G|1429
*
9Q3Q|1|A|C|1564
9Q3Q|1|A|C|1565
*
9Q3Q|1|A|G|1568
9Q3Q|1|A|A|1569
9Q3Q|1|A|A|1570
9Q3Q|1|A|A|1571
9Q3Q|1|A|A|1572
9Q3Q|1|A|G|1573
9Q3Q|1|A|C|1574
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
Coloring options: