J3_9Q3Q_022
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 9Q3Q|1|a|C|48, 9Q3Q|1|a|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3Q_022 not in the Motif Atlas
- Homologous match to J3_8B0X_027
- Geometric discrepancy: 0.0386
- The information below is about J3_8B0X_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.3
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-cWS-tHH-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9Q3Q|1|a|G|46
9Q3Q|1|a|C|47
9Q3Q|1|a|C|48
9Q3Q|1|a|U|49
9Q3Q|1|a|A|50
9Q3Q|1|a|A|51
9Q3Q|1|a|C|52
*
9Q3Q|1|a|G|359
9Q3Q|1|a|G|360
9Q3Q|1|a|G|361
9Q3Q|1|a|G|362
9Q3Q|1|a|A|363
9Q3Q|1|a|A|364
9Q3Q|1|a|U|365
9Q3Q|1|a|A|366
9Q3Q|1|a|U|367
*
9Q3Q|1|a|A|393
9Q3Q|1|a|G|394
9Q3Q|1|a|C|395
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain l
- Small ribosomal subunit protein uS12
- Chain p
- Small ribosomal subunit protein bS16
- Chain w
- Transfer RNA; tRNA
- Chain z
- Elongation factor Tu 2
Coloring options: