J3_9Q3R_002
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 9Q3R|1|A|A|504, 9Q3R|1|A|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3R_002 not in the Motif Atlas
- Homologous match to J3_8B0X_032
- Geometric discrepancy: 0.04
- The information below is about J3_8B0X_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.3
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9Q3R|1|A|G|30
9Q3R|1|A|C|31
*
9Q3R|1|A|G|474
9Q3R|1|A|C|475
9Q3R|1|A|G|476
9Q3R|1|A|A|477
9Q3R|1|A|A|478
9Q3R|1|A|A|479
9Q3R|1|A|A|480
9Q3R|1|A|G|481
9Q3R|1|A|A|482
9Q3R|1|A|A|483
9Q3R|1|A|C|484
*
9Q3R|1|A|G|496
9Q3R|1|A|A|497
9Q3R|1|A|G|498
9Q3R|1|A|U|499
9Q3R|1|A|G|500
9Q3R|1|A|A|501
9Q3R|1|A|A|502
9Q3R|1|A|A|503
9Q3R|1|A|A|504
9Q3R|1|A|A|505
9Q3R|1|A|G|506
9Q3R|1|A|A|507
9Q3R|1|A|A|508
9Q3R|1|A|C|509
9Q3R|1|A|C|510
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain S
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L22
- Chain W
- 50S ribosomal protein L24
Coloring options: