J3_9Q3R_003
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9Q3R|1|A|U|34, 9Q3R|1|A|U|448, 9Q3R|1|A|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3R_003 not in the Motif Atlas
- Homologous match to J3_8B0X_033
- Geometric discrepancy: 0.0338
- The information below is about J3_8B0X_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.3
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9Q3R|1|A|C|32
9Q3R|1|A|C|33
9Q3R|1|A|U|34
9Q3R|1|A|G|35
*
9Q3R|1|A|C|445
9Q3R|1|A|G|446
9Q3R|1|A|A|447
9Q3R|1|A|U|448
9Q3R|1|A|A|449
9Q3R|1|A|G|450
9Q3R|1|A|U|451
9Q3R|1|A|G|452
9Q3R|1|A|A|453
9Q3R|1|A|A|454
9Q3R|1|A|C|455
9Q3R|1|A|C|456
9Q3R|1|A|A|457
9Q3R|1|A|G|458
9Q3R|1|A|U|459
9Q3R|1|A|A|460
9Q3R|1|A|C|461
*
9Q3R|1|A|G|468
9Q3R|1|A|G|469
9Q3R|1|A|A|470
9Q3R|1|A|A|471
9Q3R|1|A|A|472
9Q3R|1|A|G|473
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain E
- Large ribosomal subunit protein uL4
- Chain S
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L23
Coloring options: