J3_9Q3R_011

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q3R_011 not in the Motif Atlas

Homologous match to J3_8B0X_020

Geometric discrepancy: 0.0526

The information below is about J3_8B0X_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q3R|1|A|U|1344
9Q3R|1|A|C|1345
9Q3R|1|A|G|1346
9Q3R|1|A|A|1347
9Q3R|1|A|C|1348
9Q3R|1|A|C|1349
*
9Q3R|1|A|G|1382
9Q3R|1|A|A|1383
9Q3R|1|A|A|1384
9Q3R|1|A|A|1385
*
9Q3R|1|A|U|1402
9Q3R|1|A|A|1403

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L23