J3_9Q3R_014

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GGAGGCUUUGAAG*UGGAGCCGACCUU*AAUAC

Length

31 nucleotides

Bulged bases

9Q3R|1|A|G|2125, 9Q3R|1|A|U|2132, 9Q3R|1|A|U|2166, 9Q3R|1|A|A|2171, 9Q3R|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q3R|1|A|G|2124
9Q3R|1|A|G|2125
9Q3R|1|A|A|2126
9Q3R|1|A|G|2127
9Q3R|1|A|G|2128
9Q3R|1|A|C|2129
9Q3R|1|A|U|2130
9Q3R|1|A|U|2131
9Q3R|1|A|U|2132
9Q3R|1|A|G|2133
9Q3R|1|A|A|2134
9Q3R|1|A|A|2135
9Q3R|1|A|G|2136
*
9Q3R|1|A|U|2155
9Q3R|1|A|G|2156
9Q3R|1|A|G|2157
9Q3R|1|A|A|2158
9Q3R|1|A|G|2159
9Q3R|1|A|C|2160
9Q3R|1|A|C|2161
9Q3R|1|A|G|2162
9Q3R|1|A|A|2163
9Q3R|1|A|C|2164
9Q3R|1|A|C|2165
9Q3R|1|A|U|2166
9Q3R|1|A|U|2167
*
9Q3R|1|A|A|2170
9Q3R|1|A|A|2171
9Q3R|1|A|U|2172
9Q3R|1|A|A|2173
9Q3R|1|A|C|2174

Current chains

Chain A

23S Ribosomal RNA

Nearby chains