J3_9Q3R_020

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9Q3R|1|A|U|2833, 9Q3R|1|A|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q3R_020 not in the Motif Atlas

Homologous match to J3_8B0X_025

Geometric discrepancy: 0.0458

The information below is about J3_8B0X_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q3R|1|A|G|2812
9Q3R|1|A|A|2813
9Q3R|1|A|A|2814
9Q3R|1|A|C|2815
*
9Q3R|1|A|G|2831
9Q3R|1|A|U|2832
9Q3R|1|A|U|2833
9Q3R|1|A|G|2834
9Q3R|1|A|A|2835
9Q3R|1|A|U|2836
*
9Q3R|1|A|A|2882
9Q3R|1|A|A|2883
9Q3R|1|A|U|2884
9Q3R|1|A|G|2885
9Q3R|1|A|A|2886
9Q3R|1|A|A|2887
9Q3R|1|A|C|2888

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain P

Large ribosomal subunit protein bL17