J3_9Q3R_028
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3R_028 not in the Motif Atlas
- Homologous match to J3_8B0X_005
- Geometric discrepancy: 0.0434
- The information below is about J3_8B0X_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.3
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
9Q3R|1|a|C|936
9Q3R|1|a|A|937
9Q3R|1|a|A|938
9Q3R|1|a|G|939
*
9Q3R|1|a|C|1344
9Q3R|1|a|U|1345
9Q3R|1|a|A|1346
9Q3R|1|a|G|1347
9Q3R|1|a|U|1348
9Q3R|1|a|A|1349
9Q3R|1|a|A|1350
*
9Q3R|1|a|U|1372
9Q3R|1|a|G|1373
9Q3R|1|a|A|1374
9Q3R|1|a|A|1375
9Q3R|1|a|U|1376
9Q3R|1|a|A|1377
9Q3R|1|a|C|1378
9Q3R|1|a|G|1379
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain i
- Small ribosomal subunit protein uS9
Coloring options: