J3_9Q3R_030
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9Q3R|1|a|A|975, 9Q3R|1|a|G|976, 9Q3R|1|a|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3R_030 not in the Motif Atlas
- Homologous match to J3_8B0X_007
- Geometric discrepancy: 0.0392
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.3
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9Q3R|1|a|U|955
9Q3R|1|a|U|956
9Q3R|1|a|U|957
9Q3R|1|a|A|958
9Q3R|1|a|A|959
9Q3R|1|a|U|960
9Q3R|1|a|U|961
9Q3R|1|a|C|962
*
9Q3R|1|a|G|973
9Q3R|1|a|A|974
9Q3R|1|a|A|975
9Q3R|1|a|G|976
9Q3R|1|a|A|977
9Q3R|1|a|A|978
9Q3R|1|a|C|979
9Q3R|1|a|C|980
9Q3R|1|a|U|981
9Q3R|1|a|U|982
9Q3R|1|a|A|983
9Q3R|1|a|C|984
*
9Q3R|1|a|G|1221
9Q3R|1|a|G|1222
9Q3R|1|a|C|1223
9Q3R|1|a|U|1224
9Q3R|1|a|A|1225
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain m
- Small ribosomal subunit protein uS13
- Chain n
- Small ribosomal subunit protein uS14
- Chain s
- Small ribosomal subunit protein uS19
- Chain w
- Transfer RNA; tRNA
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