J3_9Q6Q_046

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

9Q6Q|1|2A|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6Q_046 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1811

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.4

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

11

Unit IDs

9Q6Q|1|2A|G|1344
9Q6Q|1|2A|C|1345
9Q6Q|1|2A|G|1346
9Q6Q|1|2A|G|1347
9Q6Q|1|2A|G|1348
9Q6Q|1|2A|A|1349
9Q6Q|1|2A|C|1350
*
9Q6Q|1|2A|G|1381
9Q6Q|1|2A|G|1382
9Q6Q|1|2A|C|1383
9Q6Q|1|2A|A|1384
9Q6Q|1|2A|G|1385
*
9Q6Q|1|2A|C|1402
9Q6Q|1|2A|C|1403

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23