J3_9Q6Q_047

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6Q_047 not in the Motif Atlas

Homologous match to J3_8B0X_035

Geometric discrepancy: 0.0868

The information below is about J3_8B0X_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9Q6Q|1|2A|G|1424
9Q6Q|1|2A|G|1425
9Q6Q|1|2A|G|1426
9Q6Q|1|2A|A|1427
9Q6Q|1|2A|C|1428
9Q6Q|1|2A|G|1429
*
9Q6Q|1|2A|C|1564
9Q6Q|1|2A|C|1565
*
9Q6Q|1|2A|G|1568
9Q6Q|1|2A|A|1569
9Q6Q|1|2A|A|1570
9Q6Q|1|2A|A|1571
9Q6Q|1|2A|A|1572
9Q6Q|1|2A|G|1573
9Q6Q|1|2A|C|1574

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2