J3_9Q6S_006

3D structure

PDB id

9Q6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

9Q6S|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6S_006 not in the Motif Atlas

Homologous match to J3_8B0X_034

Geometric discrepancy: 0.0939

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9Q6S|1|1A|C|297
9Q6S|1|1A|G|298
9Q6S|1|1A|A|299
9Q6S|1|1A|A|300
9Q6S|1|1A|G|301
*
9Q6S|1|1A|C|316
9Q6S|1|1A|G|317
9Q6S|1|1A|C|318
9Q6S|1|1A|C|319
9Q6S|1|1A|A|320
9Q6S|1|1A|G|321
9Q6S|1|1A|A|322
9Q6S|1|1A|G|323
9Q6S|1|1A|A|324
9Q6S|1|1A|G|325
*
9Q6S|1|1A|C|337
9Q6S|1|1A|G|338
9Q6S|1|1A|U|339
9Q6S|1|1A|A|340
9Q6S|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24