J3_9Q6T_061

3D structure

PDB id

9Q6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin and protein Y at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9Q6T|1|2a|U|871, 9Q6T|1|2a|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6T_061 not in the Motif Atlas

Homologous match to J3_8B0X_004

Geometric discrepancy: 0.1975

The information below is about J3_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

9Q6T|1|2a|C|826
9Q6T|1|2a|U|827
9Q6T|1|2a|A|828
9Q6T|1|2a|G|829
*
9Q6T|1|2a|C|857
9Q6T|1|2a|G|858
9Q6T|1|2a|A|859
9Q6T|1|2a|A|860
9Q6T|1|2a|G|861
*
9Q6T|1|2a|C|868
9Q6T|1|2a|G|869
9Q6T|1|2a|U|870
9Q6T|1|2a|U|871
9Q6T|1|2a|A|872
9Q6T|1|2a|A|873
9Q6T|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8