J3_9Q6T_069

3D structure

PDB id

9Q6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin and protein Y at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGC*GGAC*GGAG

Length

11 nucleotides

Bulged bases

9Q6T|1|2a|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6T_069 not in the Motif Atlas

Geometric match to J3_8B0X_012

Geometric discrepancy: 0.1282

The information below is about J3_8B0X_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82365.8

Basepair signature

cWW-F-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

9Q6T|1|2a|C|1116
9Q6T|1|2a|G|1117
9Q6T|1|2a|C|1118
*
9Q6T|1|2a|G|1155
9Q6T|1|2a|G|1156
9Q6T|1|2a|A|1157
9Q6T|1|2a|C|1158
*
9Q6T|1|2a|G|1181
9Q6T|1|2a|G|1182
9Q6T|1|2a|A|1183
9Q6T|1|2a|G|1184

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9

Chain 2n

30S ribosomal protein S14 type Z