J3_9Q6U_006
3D structure
- PDB id
- 9Q6U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-26 triazole derivative and protein Y at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAG*CGCCAGAGAG*CGUAG
- Length
- 20 nucleotides
- Bulged bases
- 9Q6U|1|1A|G|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q6U_006 not in the Motif Atlas
- Homologous match to J3_8B0X_034
- Geometric discrepancy: 0.0929
- The information below is about J3_8B0X_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9Q6U|1|1A|C|297
9Q6U|1|1A|G|298
9Q6U|1|1A|A|299
9Q6U|1|1A|A|300
9Q6U|1|1A|G|301
*
9Q6U|1|1A|C|316
9Q6U|1|1A|G|317
9Q6U|1|1A|C|318
9Q6U|1|1A|C|319
9Q6U|1|1A|A|320
9Q6U|1|1A|G|321
9Q6U|1|1A|A|322
9Q6U|1|1A|G|323
9Q6U|1|1A|A|324
9Q6U|1|1A|G|325
*
9Q6U|1|1A|C|337
9Q6U|1|1A|G|338
9Q6U|1|1A|U|339
9Q6U|1|1A|A|340
9Q6U|1|1A|G|341
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1F
- 50S ribosomal protein L4
- Chain 1Y
- 50S ribosomal protein L24
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