J3_9Q6V_022
3D structure
- PDB id
- 9Q6V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 9Q6V|1|1a|C|48, 9Q6V|1|1a|A|50, 9Q6V|1|1a|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q6V_022 not in the Motif Atlas
- Homologous match to J3_8B0X_027
- Geometric discrepancy: 0.1003
- The information below is about J3_8B0X_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-cWS-tHH-tSS-cWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
9Q6V|1|1a|G|46
9Q6V|1|1a|C|47
9Q6V|1|1a|C|48
9Q6V|1|1a|U|49
9Q6V|1|1a|A|50
9Q6V|1|1a|A|51
9Q6V|1|1a|G|52
*
9Q6V|1|1a|U|359
9Q6V|1|1a|A|360
9Q6V|1|1a|G|361
9Q6V|1|1a|G|362
9Q6V|1|1a|A|363
9Q6V|1|1a|A|364
9Q6V|1|1a|U|365
9Q6V|1|1a|C|366
9Q6V|1|1a|U|367
*
9Q6V|1|1a|A|393
9Q6V|1|1a|G|394
9Q6V|1|1a|C|395
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1l
- 30S ribosomal protein S12
- Chain 1p
- 30S ribosomal protein S16
Coloring options: