J3_9Q6V_059

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CGG*CUAGA*UGACG

Length

13 nucleotides

Bulged bases

9Q6V|1|2a|A|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6V_059 not in the Motif Atlas

Homologous match to J3_8B0X_028

Geometric discrepancy: 0.1169

The information below is about J3_8B0X_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.8

Basepair signature

cWW-F-cWW-cWW-tHW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9Q6V|1|2a|C|586
9Q6V|1|2a|G|587
9Q6V|1|2a|G|588
*
9Q6V|1|2a|C|651
9Q6V|1|2a|U|652
9Q6V|1|2a|A|653
9Q6V|1|2a|G|654
9Q6V|1|2a|A|655
*
9Q6V|1|2a|U|751
9Q6V|1|2a|G|752
9Q6V|1|2a|A|753
9Q6V|1|2a|C|754
9Q6V|1|2a|G|755

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2h

30S ribosomal protein S8

Chain 2l

30S ribosomal protein S12

Chain 2o

30S ribosomal protein S15

Chain 2q

30S ribosomal protein S17