J3_9Q87_027

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9Q87|1|a|A|1611

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q87_027 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.1092

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9Q87|1|a|C|1308
9Q87|1|a|A|1309
9Q87|1|a|A|1310
9Q87|1|a|G|1311
*
9Q87|1|a|C|1607
9Q87|1|a|C|1608
9Q87|1|a|C|1609
9Q87|1|a|A|1610
9Q87|1|a|A|1611
9Q87|1|a|A|1612
9Q87|1|a|C|1613
*
9Q87|1|a|G|1622
9Q87|1|a|U|1623
9Q87|1|a|G|1624

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34