J3_9Q87_036
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 9Q87|1|a|U|2837, 9Q87|1|a|A|2839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q87_036 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1153
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
9Q87|1|a|G|2816
9Q87|1|a|A|2817
9Q87|1|a|A|2818
9Q87|1|a|C|2819
*
9Q87|1|a|G|2835
9Q87|1|a|U|2836
9Q87|1|a|U|2837
9Q87|1|a|G|2838
9Q87|1|a|A|2839
9Q87|1|a|U|2840
*
9Q87|1|a|A|2886
9Q87|1|a|A|2887
9Q87|1|a|U|2888
9Q87|1|a|G|2889
9Q87|1|a|A|2890
9Q87|1|a|A|2891
9Q87|1|a|C|2892
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain m
- Large ribosomal subunit protein bL17
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: