J3_9QEG_007

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QEG_007 not in the Motif Atlas

Homologous match to J3_9DFE_008

Geometric discrepancy: 0.0689

The information below is about J3_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9QEG|1|A|C|743
9QEG|1|A|A|744
9QEG|1|A|G|745
*
9QEG|1|A|C|777
9QEG|1|A|G|778
9QEG|1|A|A|779
9QEG|1|A|A|780
9QEG|1|A|C|781
*
9QEG|1|A|G|805
9QEG|1|A|A|806
9QEG|1|A|U|807
9QEG|1|A|G|808

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2