J3_9QEG_016

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CA*UAUAAG*CGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QEG_016 not in the Motif Atlas

Homologous match to J3_9DFE_018

Geometric discrepancy: 0.2473

The information below is about J3_9DFE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24127.1

Basepair signature

cWW-F-cWW-tWH-F-F-tHS-cWW

Number of instances in this motif group

2

Unit IDs

9QEG|1|A|C|2816
9QEG|1|A|A|2817
*
9QEG|1|A|U|2826
9QEG|1|A|A|2827
9QEG|1|A|U|2828
9QEG|1|A|A|2829
9QEG|1|A|A|2830
9QEG|1|A|G|2831
*
9QEG|1|A|C|2909
9QEG|1|A|G|2910
9QEG|1|A|A|2911
9QEG|1|A|A|2912
9QEG|1|A|G|2913

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3