J3_9QEH_009

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

UAAG*CGCAAAC*GUA

Length

14 nucleotides

Bulged bases

9QEH|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QEH_009 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1091

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

9QEH|1|A|U|1343
9QEH|1|A|A|1344
9QEH|1|A|A|1345
9QEH|1|A|G|1346
*
9QEH|1|A|C|1649
9QEH|1|A|G|1650
9QEH|1|A|C|1651
9QEH|1|A|A|1652
9QEH|1|A|A|1653
9QEH|1|A|A|1654
9QEH|1|A|C|1655
*
9QEH|1|A|G|1664
9QEH|1|A|U|1665
9QEH|1|A|A|1666

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34