J3_9QEH_011

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QEH_011 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0752

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9QEH|1|A|G|1468
9QEH|1|A|G|1469
9QEH|1|A|G|1470
9QEH|1|A|A|1471
9QEH|1|A|C|1472
9QEH|1|A|G|1473
*
9QEH|1|A|C|1611
9QEH|1|A|C|1612
*
9QEH|1|A|G|1615
9QEH|1|A|A|1616
9QEH|1|A|A|1617
9QEH|1|A|A|1618
9QEH|1|A|A|1619
9QEH|1|A|G|1620
9QEH|1|A|C|1621

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2