J3_9QIW_002

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9QIW|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QIW|1|L5|C|196
9QIW|1|L5|A|197
9QIW|1|L5|A|198
9QIW|1|L5|G|199
*
9QIW|1|L5|C|215
9QIW|1|L5|C|216
9QIW|1|L5|C|217
9QIW|1|L5|A|218
9QIW|1|L5|G|219
9QIW|1|L5|C|220
9QIW|1|L5|C|221
9QIW|1|L5|C|222
9QIW|1|L5|G|223
9QIW|1|L5|U|224
9QIW|1|L5|G|225
9QIW|1|L5|G|226
9QIW|1|L5|A|227
9QIW|1|L5|C|228
*
9QIW|1|L5|G|240
9QIW|1|L5|G|241
9QIW|1|L5|U|242
9QIW|1|L5|A|243
9QIW|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26