J3_9QIW_007

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CAG*CGUAG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QIW_007 not in the Motif Atlas

Homologous match to J3_8CRE_010

Geometric discrepancy: 0.2703

The information below is about J3_8CRE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9QIW|1|L5|C|1546
9QIW|1|L5|A|1547
9QIW|1|L5|G|1548
*
9QIW|1|L5|C|1580
9QIW|1|L5|G|1581
9QIW|1|L5|U|1582
9QIW|1|L5|A|1583
9QIW|1|L5|G|1584
*
9QIW|1|L5|U|1609
9QIW|1|L5|C|1610
9QIW|1|L5|C|1611
9QIW|1|L5|G|1612

Current chains

Chain L5

28S rRNA

Nearby chains