J3_9QJC_003

3D structure

PDB id

9QJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast pre-60S Domain II intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUC*GCGUG*UAGUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QJC|1|1|U|942
9QJC|1|1|U|943
9QJC|1|1|C|944
*
9QJC|1|1|G|1375
9QJC|1|1|C|1376
9QJC|1|1|G|1377
9QJC|1|1|U|1378
9QJC|1|1|G|1379
*
9QJC|1|1|U|1427
9QJC|1|1|A|1428
9QJC|1|1|G|1429
9QJC|1|1|U|1430
9QJC|1|1|G|1431

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain D

Protein MAK16