J3_9QLQ_023

3D structure

PDB id

9QLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with full length ARF1 - alternative State

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9QLQ|1|L5|U|4882, 9QLQ|1|L5|A|4938, 9QLQ|1|L5|C|4940, 9QLQ|1|L5|A|4943, 9QLQ|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QLQ|1|L5|G|4751
9QLQ|1|L5|U|4752
9QLQ|1|L5|U|4753
9QLQ|1|L5|G|4754
*
9QLQ|1|L5|C|4879
9QLQ|1|L5|C|4880
9QLQ|1|L5|U|4881
9QLQ|1|L5|U|4882
9QLQ|1|L5|C|4883
*
9QLQ|1|L5|G|4936
9QLQ|1|L5|C|4937
9QLQ|1|L5|A|4938
9QLQ|1|L5|C|4939
9QLQ|1|L5|C|4940
9QLQ|1|L5|G|4941
9QLQ|1|L5|C|4942
9QLQ|1|L5|A|4943
9QLQ|1|L5|C|4944
9QLQ|1|L5|G|4945
9QLQ|1|L5|U|4946
9QLQ|1|L5|U|4947
9QLQ|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a