J3_9QQA_001

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AG*CGC(A2M)AAU*(A2M)GU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQA_001 not in the Motif Atlas

Geometric match to J3_8P9A_068

Geometric discrepancy: 0.1386

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9QQA|1|A2|A|40
9QQA|1|A2|G|41
*
9QQA|1|A2|C|482
9QQA|1|A2|G|483
9QQA|1|A2|C|484
9QQA|1|A2|A2M|485
9QQA|1|A2|A|486
9QQA|1|A2|A|487
9QQA|1|A2|U|488
*
9QQA|1|A2|A2M|513
9QQA|1|A2|G|514
9QQA|1|A2|U|515

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

Small ribosomal subunit protein uS4

Chain Aw

40S ribosomal protein S23