J3_9QQA_002

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCGGCUUUG*CUAG

Length

29 nucleotides

Bulged bases

9QQA|1|A2|C|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQA|1|A2|C|223
9QQA|1|A2|A|224
9QQA|1|A2|G|225
9QQA|1|A2|A|226
9QQA|1|A2|U|227
9QQA|1|A2|C|228
9QQA|1|A2|A|229
9QQA|1|A2|A|230
9QQA|1|A2|A|231
9QQA|1|A2|A|232
9QQA|1|A2|C|233
9QQA|1|A2|C|234
9QQA|1|A2|A|235
9QQA|1|A2|A|236
9QQA|1|A2|C|237
9QQA|1|A2|C|238
*
9QQA|1|A2|G|281
9QQA|1|A2|C|282
9QQA|1|A2|G|283
9QQA|1|A2|G|284
9QQA|1|A2|C|285
9QQA|1|A2|U|286
9QQA|1|A2|U|287
9QQA|1|A2|U|288
9QQA|1|A2|G|289
*
9QQA|1|A2|C|296
9QQA|1|A2|U|297
9QQA|1|A2|A|298
9QQA|1|A2|G|299

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8

Chain Ak

Small ribosomal subunit protein uS17