J3_9QQA_019
3D structure
- PDB id
- 9QQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and NMT1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 9QQA|1|B5|G|409, 9QQA|1|B5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QQA_019 not in the Motif Atlas
- Geometric match to J3_8CRE_006
- Geometric discrepancy: 0.1052
- The information below is about J3_8CRE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9QQA|1|B5|U|380
9QQA|1|B5|U|381
9QQA|1|B5|G|382
9QQA|1|B5|A|383
9QQA|1|B5|A|384
9QQA|1|B5|A|385
9QQA|1|B5|A|386
9QQA|1|B5|G|387
9QQA|1|B5|A|388
9QQA|1|B5|A|389
9QQA|1|B5|C|390
*
9QQA|1|B5|G|401
9QQA|1|B5|A|402
9QQA|1|B5|G|403
9QQA|1|B5|U|404
9QQA|1|B5|U|405
9QQA|1|B5|C|406
9QQA|1|B5|A|407
9QQA|1|B5|A|408
9QQA|1|B5|G|409
9QQA|1|B5|A|410
9QQA|1|B5|G|411
9QQA|1|B5|G|412
9QQA|1|B5|G|413
9QQA|1|B5|C|414
9QQA|1|B5|G|415
*
9QQA|1|B8|C|19
9QQA|1|B8|A|20
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL4
- Chain BP
- Large ribosomal subunit protein uL22
- Chain BY
- Ribosomal protein L26
- Chain Bl
- 60S ribosomal protein L39-like
Coloring options: