J3_9QQA_022

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAG*CG(PSU)AG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQA_022 not in the Motif Atlas

Geometric match to J3_8CRE_010

Geometric discrepancy: 0.1622

The information below is about J3_8CRE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9QQA|1|B5|C|1501
9QQA|1|B5|A|1502
9QQA|1|B5|G|1503
*
9QQA|1|B5|C|1535
9QQA|1|B5|G|1536
9QQA|1|B5|PSU|1537
9QQA|1|B5|A|1538
9QQA|1|B5|G|1539
*
9QQA|1|B5|U|1564
9QQA|1|B5|C|1565
9QQA|1|B5|C|1566
9QQA|1|B5|G|1567

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BR

Ribosomal protein L19

Chain Bp

60S ribosomal protein L37a