J3_9QQA_023

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

9QQA|1|B5|A|1744, 9QQA|1|B5|U|1773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQA_023 not in the Motif Atlas

Homologous match to J3_8GLP_029

Geometric discrepancy: 0.1419

The information below is about J3_8GLP_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.2

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

5

Unit IDs

9QQA|1|B5|U|1665
9QQA|1|B5|U|1666
*
9QQA|1|B5|A|1741
9QQA|1|B5|G|1742
9QQA|1|B5|A|1743
9QQA|1|B5|A|1744
9QQA|1|B5|G|1745
*
9QQA|1|B5|C|1771
9QQA|1|B5|G|1772
9QQA|1|B5|U|1773
9QQA|1|B5|G|1774
9QQA|1|B5|G|1775
9QQA|1|B5|A|1776

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BF

Ribosomal Protein uL30

Chain BT

60S ribosomal protein L21

Chain Bb

60S ribosomal protein L29