J3_9QQA_038

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CA(PSU)*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

9QQA|1|B5|U|4728, 9QQA|1|B5|C|4729

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQA|1|B5|C|4709
9QQA|1|B5|A|4710
9QQA|1|B5|PSU|4711
*
9QQA|1|B5|G|4725
9QQA|1|B5|C|4726
9QQA|1|B5|U|4727
9QQA|1|B5|U|4728
9QQA|1|B5|C|4729
9QQA|1|B5|U|4730
*
9QQA|1|B5|A|4799
9QQA|1|B5|A|4800
9QQA|1|B5|G|4801
9QQA|1|B5|G|4802

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BP

Large ribosomal subunit protein uL22

Chain Bd

60S ribosomal protein L31