J3_9QQB_002

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*(A2M)GU

Length

20 nucleotides

Bulged bases

9QQB|1|A2|A|45, 9QQB|1|A2|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQB_002 not in the Motif Atlas

Geometric match to J3_8CRE_072

Geometric discrepancy: 0.0964

The information below is about J3_8CRE_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9QQB|1|A2|A|40
9QQB|1|A2|G|41
9QQB|1|A2|A|42
9QQB|1|A2|U|43
9QQB|1|A2|U|44
9QQB|1|A2|A|45
9QQB|1|A2|A|46
9QQB|1|A2|G|47
*
9QQB|1|A2|C|480
9QQB|1|A2|G|481
9QQB|1|A2|C|482
9QQB|1|A2|G|483
9QQB|1|A2|C|484
9QQB|1|A2|A2M|485
9QQB|1|A2|A|486
9QQB|1|A2|A|487
9QQB|1|A2|U|488
*
9QQB|1|A2|A2M|513
9QQB|1|A2|G|514
9QQB|1|A2|U|515

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

Small ribosomal subunit protein uS4

Chain Aw

40S ribosomal protein S23