J3_9QQB_003

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CAGAUCAAAACCAACCC*GGCGGCUUUG*CUAG

Length

31 nucleotides

Bulged bases

9QQB|1|A2|C|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQB|1|A2|C|223
9QQB|1|A2|A|224
9QQB|1|A2|G|225
9QQB|1|A2|A|226
9QQB|1|A2|U|227
9QQB|1|A2|C|228
9QQB|1|A2|A|229
9QQB|1|A2|A|230
9QQB|1|A2|A|231
9QQB|1|A2|A|232
9QQB|1|A2|C|233
9QQB|1|A2|C|234
9QQB|1|A2|A|235
9QQB|1|A2|A|236
9QQB|1|A2|C|237
9QQB|1|A2|C|238
9QQB|1|A2|C|239
*
9QQB|1|A2|G|280
9QQB|1|A2|G|281
9QQB|1|A2|C|282
9QQB|1|A2|G|283
9QQB|1|A2|G|284
9QQB|1|A2|C|285
9QQB|1|A2|U|286
9QQB|1|A2|U|287
9QQB|1|A2|U|288
9QQB|1|A2|G|289
*
9QQB|1|A2|C|296
9QQB|1|A2|U|297
9QQB|1|A2|A|298
9QQB|1|A2|G|299

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8

Chain Ak

Small ribosomal subunit protein uS17