J3_9QQB_006

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQB_006 not in the Motif Atlas

Geometric match to J3_8P9A_073

Geometric discrepancy: 0.1914

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

9QQB|1|A2|A|817
9QQB|1|A2|G|818
9QQB|1|A2|A|819
9QQB|1|A2|G|820
*
9QQB|1|A2|C|830
9QQB|1|A2|A|831
9QQB|1|A2|G|832
*
9QQB|1|A2|C|844
9QQB|1|A2|U|845
9QQB|1|A2|G|846
9QQB|1|A2|G|847
9QQB|1|A2|A|848
9QQB|1|A2|U|849

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

Small ribosomal subunit protein uS4

Chain Ax

40S ribosomal protein S24