J3_9QQB_011

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

9QQB|1|A2|G|1257, 9QQB|1|A2|A|1259

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQB|1|A2|C|1238
9QQB|1|A2|PSU|1239
9QQB|1|A2|U|1240
9QQB|1|A2|A|1241
9QQB|1|A2|A|1242
9QQB|1|A2|U|1243
9QQB|1|A2|U|1244
9QQB|1|A2|PSU|1245
*
9QQB|1|A2|G|1256
9QQB|1|A2|G|1257
9QQB|1|A2|G|1258
9QQB|1|A2|A|1259
9QQB|1|A2|A|1260
9QQB|1|A2|A|1261
9QQB|1|A2|C|1262
9QQB|1|A2|C|1263
9QQB|1|A2|U|1264
9QQB|1|A2|C|1265
9QQB|1|A2|A|1266
9QQB|1|A2|C|1267
*
9QQB|1|A2|G|1517
9QQB|1|A2|G|1518
9QQB|1|A2|C|1519
9QQB|1|A2|U|1520
9QQB|1|A2|G|1521

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ubiquitin-ribosomal protein eS31 fusion protein

Chain AG

Small ribosomal subunit protein uS14

Chain Ao

Small ribosomal subunit protein uS19

Chain Ar

Small ribosomal subunit protein uS13

Chain At

Small ribosomal subunit protein uS10