J3_9QQB_018
3D structure
- PDB id
- 9QQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Quaternary complex of a translating ribosome, NAC, NMT1, and NatA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.43 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9QQB|1|B5|U|354, 9QQB|1|B5|A|362, 9QQB|1|B8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QQB_018 not in the Motif Atlas
- Geometric match to J3_8P9A_045
- Geometric discrepancy: 0.0824
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
9QQB|1|B5|C|351
9QQB|1|B5|G|352
9QQB|1|B5|A|353
9QQB|1|B5|U|354
9QQB|1|B5|A|355
9QQB|1|B5|G|356
9QQB|1|B5|U|357
9QQB|1|B5|C|358
9QQB|1|B5|A|359
9QQB|1|B5|A|360
9QQB|1|B5|C|361
9QQB|1|B5|A|362
9QQB|1|B5|A|363
9QQB|1|B5|G|364
9QQB|1|B5|U|365
9QQB|1|B5|A|366
9QQB|1|B5|C|367
*
9QQB|1|B5|G|374
9QQB|1|B5|G|375
9QQB|1|B5|A|376
9QQB|1|B5|A|377
9QQB|1|B5|A|378
9QQB|1|B5|G|379
*
9QQB|1|B8|C|21
9QQB|1|B8|U|22
9QQB|1|B8|C|23
9QQB|1|B8|G|24
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL4
- Chain BY
- Ribosomal protein L26
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- 60S ribosomal protein L39-like
Coloring options: