J3_9QQB_020

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA

Length

28 nucleotides

Bulged bases

9QQB|1|B5|G|409, 9QQB|1|B5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQB_020 not in the Motif Atlas

Geometric match to J3_8CRE_006

Geometric discrepancy: 0.1036

The information below is about J3_8CRE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9QQB|1|B5|U|380
9QQB|1|B5|U|381
9QQB|1|B5|G|382
9QQB|1|B5|A|383
9QQB|1|B5|A|384
9QQB|1|B5|A|385
9QQB|1|B5|A|386
9QQB|1|B5|G|387
9QQB|1|B5|A|388
9QQB|1|B5|A|389
9QQB|1|B5|C|390
*
9QQB|1|B5|G|401
9QQB|1|B5|A|402
9QQB|1|B5|G|403
9QQB|1|B5|U|404
9QQB|1|B5|U|405
9QQB|1|B5|C|406
9QQB|1|B5|A|407
9QQB|1|B5|A|408
9QQB|1|B5|G|409
9QQB|1|B5|A|410
9QQB|1|B5|G|411
9QQB|1|B5|G|412
9QQB|1|B5|G|413
9QQB|1|B5|C|414
9QQB|1|B5|G|415
*
9QQB|1|B8|C|19
9QQB|1|B8|A|20

Current chains

Chain B5

28S rRNA

Chain B8

5.8S rRNA

Nearby chains

Chain BC

Large ribosomal subunit protein uL4

Chain BP

Large ribosomal subunit protein uL22

Chain BY

Ribosomal protein L26

Chain Bl

60S ribosomal protein L39-like

Chain XA

N-alpha-acetyltransferase 15, NatA auxiliary subunit